PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g013520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 444aa    MW: 48880.1 Da    PI: 5.9058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g013520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13281327455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L+
  Sopen00g013520.1 281 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 327
                       799***********************6.....4*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-5027216IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.218277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-15280330No hitNo description
SuperFamilySSF474591.31E-17280338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16281336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-17283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEQLVVSSSP MAAAPPPVDV NQVPLGLQQM LQYVVKSQPE WWAYAIFWQT SNDDEGKNFL  60
AWGDGYFQGD GVVINNKGGS SGSGGSSSSL KSQAQSERKK VIKGIQALMD GNGDTDLVDD  120
GDVTDTEWFY VMSLARSFSA GDGSVTGKAF GSDDFLWITG PDQFQLHYSC ERAKEAQIHG  180
IQTLVSIPTS NGVFELGSTQ LIKQNLSLVQ QVKSLFLCCP PIQFLEKTIS FADIGLVTGL  240
QQDDNDYKLR ENSKKPHPVV AKKRGRKPKG GEEDAHMAAL NHVEAERQRR EKLNHRFYAL  300
RSVVPNVSRM DKASLLSDAV SYINQLKAKV DELELQLIDH TKKPKIVTES SSADNQSATT  360
SSDDQVIKAA NSTAAPEVEV KIVGTDAMIR VQSENVDYPS AKLMIALQNL QMQVXIYKCK  420
STMPAFHPSI ISSFMMLWLE FLKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A4e-33272169192Transcription factor MYC3
4rs9_A4e-33272169192Transcription factor MYC3
4rqw_B4e-33272169192Transcription factor MYC3
4rqw_A4e-33272169192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253266KKPHPVVAKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230021.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_004230022.10.0PREDICTED: transcription factor MYC2-like isoform X2
TrEMBLK4B0250.0K4B025_SOLLC; Uncharacterized protein
STRINGSolyc01g096370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-72bHLH family protein